Anomaly Detection Code

Anomaly Detection Methods for Overdose (ADMO) was developed by the Johns Hopkins Bloomberg School of Public Health’s Surveillance and Outbreak Response Team (SORT) in partnership with CSTE and a workgroup of state, Tribal, local, and territorial (STLT) epidemiologists. The ADMO approach is a set of standardized and customizable statistical methods that detect anomalies in count data. By using it, users can identify anomalies over time and space. It is not used to detect clusters. 

 

Below, you can find resources for implementing ADMO in your jurisdiction, including on-demand training videos, detailed instructions for preparing standardized data, customizing the R-based code, understanding the statistical methods, and interpreting results to support timely overdose surveillance and public health response. 

Anomaly Detection Methods for Overdose (ADMO) was developed by the Johns Hopkins Bloomberg School of Public Health’s Surveillance and Outbreak Response Team (SORT) in partnership with CSTE and a workgroup of state, Tribal, local, and territorial (STLT) epidemiologists. The ADMO approach is a set of standardized and customizable statistical methods that detect anomalies in count data. By using it, users can identify anomalies over time and space. It is not used to detect clusters. 

 

Below, you can find resources for implementing ADMO in your jurisdiction, including on-demand training videos, detailed instructions for preparing standardized data, customizing the R-based code, understanding the statistical methods, and interpreting results to support timely overdose surveillance and public health response. 

Resources 

Technical Guidance for Analytic Code

The purpose of the technical guidance is to expand upon the methods and concepts used in the analytic code. Specifically, this guidance describes:  

  • the data sources, variables, and format required to use the code; 
  • the statistical rationale and analytic workflow of the code; 
  • instructions on customizing code, which is programmed in R; and 
  • guidance on the interpretation of results, statistical outputs, and visualizations.  

 

Analytic R Code 

    Mock Datasets 

     

    Sequence  Topic Length (Min:Sec)  Speaker 
    1  Welcome and ADMO Project Overview  11:50  Melissa Marx, PhD, MPH 
    2  Methods: Key Terms, What is ADMO For and Not For, and Motivating Scenario  04:51  Alexander Perez, MPH 
    3  Methods: Data Sources, Data Preparation, and Introduction to Process Workflow  01:40  Alexander Perez, MPH 
    4  Methods: Step 1 (Nonspatial & Spatial)  02:35  Alexander Perez, MPH 
    5  Methods: Step 2.1 (Nonspatial & Spatial)  03:54  Shilpi Misra, MPH 
    6  Methods: Step 2.2 (Nonspatial & Spatial)  02:38  Shilpi Misra, MPH 
    7  Methods: Step 2.3 – Introduction (Nonspatial & Spatial)  07:15  Zachary Smith, MPH 
    8  Methods: Steps 2.3, 2.4, 2.5 (Nonspatial)  11:55  Zachary Smith, MPH 
    9  Methods: Steps 2.3, 2.4, 2.5 (Spatial)  13:10  Augustin Martin, MSc, MPP 
    10  Methods: Step 3 (Nonspatial & Spatial)  04:07  Augustin Martin, MSc, MPP 
    11  Methods: Special Considerations  03:12  Zachary Smith, MPH 
    12  Interpreting Nonspatial Analyses  10:30  Shilpi Misra, MPH
    Zachary Smith, MPH 
    13  Interpreting Spatial Analyses  07:06  Augustin Martin, MSc, MPP 
    14  Practical Applications  04:18  Zachary Smith, MPH 
    15  Closing  03:10  Zachary Smith, MPH 

     

    Early Planning Steps

    This section helps you create a clear response plan with defined roles, detection mechanisms, templates, and partners to effectively identify and respond to overdose anomalies.

    Developing Case Definitions

    This section guides public health practitioners through defining clear and comprehensive case definitions to identify overdose events as part of an anomaly investigation.

    Developing a Logic Model

    This section helps you draft a logic model for overdose anomaly response.

    Continue The Toolkit

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    Resources